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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_120494483_120495402_F

Intron Information:

Intron Rank:
139286
Intron Class:
major
Intron Phase:
Intron Coordinates:
120494483 - 120495402
Intron Length:
920

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAACAG
5'SS Class:
major
3'SS Sequence:
TTTTTTTTCCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTACAA
U12 Branch Point Sequence:
TTTTTTTTTCCC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1
64.9
41
Major BPS
64.7
0.37
1
73
31.5
Major PPT
93.7
0.98
0.6
88.2
29.1
Minor 5ss
30.7
-2.2
3.1
38.3
46.6
Minor BPS
44.3
-0.4
3.6
73.48
37.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024993
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046243
120494343 - 120497893
3551