About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_120495448_120497790_F

Intron Information:

Intron Rank:
139287
Intron Class:
major
Intron Phase:
Intron Coordinates:
120495448 - 120497790
Intron Length:
2343

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGAAT
5'SS Class:
strong_major
3'SS Sequence:
TGGTCTTATGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTCTTAT
U12 Branch Point Sequence:
CTTGCTTTACTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.5
1
0.8
87.7
27.9
Major BPS
73.7
0.59
1.2
65.7
43.2
Major PPT
75
0.56
1
69.9
40.6
Minor 5ss
33.9
-1.8
3.3
47.8
47.9
Minor BPS
58.3
0.34
1.7
74.65
43.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024993
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046243
120494343 - 120497893
3551