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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_12050318_12050912_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12050318 - 12050912
Intron Length:
595

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTAAGTCTA
5'SS Class:
major
3'SS Sequence:
AATTTTTCTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TGTTTTTTAAGA
Flanking Amino Acid:
TTVSVSYLLTDITDTFETFT
Intron Amino Acid Position:
333

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.4
0.62
1
71.7
40.1
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
84.6
0.78
0.8
82.1
34.7
Minor 5ss
39.1
-1.2
3
46.8
42.6
Minor BPS
67.1
0.53
1.6
75.16
36.6

Associated Gene:

Gene:
PITRM1
Ensembl Gene ID:
ENSAPLG00000013443
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025134
12030561 - 12059354
28794
ENSAPLT00000014055
12030561 - 12059354
28794
ENSAPLT00000038651
12032555 - 12059354
26800