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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_12051818_12053146_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12051818 - 12053146
Intron Length:
1329

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATCTGAA
5'SS Class:
major
3'SS Sequence:
ATTTCAAATGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
TGATGTTTAATA
Flanking Amino Acid:
HATHYHPSNSRFFTYGNFPL
Intron Amino Acid Position:
261

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.6
0.58
1.2
70.3
35.9
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
71.3
0.48
1
64.7
40
Minor 5ss
43.6
-0.7
3
57.6
47.1
Minor BPS
60.5
0.33
1.7
68.59
38.2

Associated Gene:

Gene:
PITRM1
Ensembl Gene ID:
ENSAPLG00000013443
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038651
12032555 - 12059354
26800
ENSAPLT00000025134
12030561 - 12059354
28794
ENSAPLT00000014055
12030561 - 12059354
28794