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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_12053308_12053704_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12053308 - 12053704
Intron Length:
397

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTT|GTAAGTTTT
5'SS Class:
major
3'SS Sequence:
TTTTCCTCTTAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TTGTACTAAAAT
Flanking Amino Acid:
VVFNEMKGAFTDNERIFAQH
Intron Amino Acid Position:
208

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
1
82.6
30.5
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
79.5
0.66
0.9
84
24.6
Minor 5ss
48.7
-0.1
2.8
73.2
37.2
Minor BPS
56.6
0.29
2
78.27
43.6

Associated Gene:

Gene:
PITRM1
Ensembl Gene ID:
ENSAPLG00000013443
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014055
12030561 - 12059354
28794
ENSAPLT00000038651
12032555 - 12059354
26800
ENSAPLT00000025134
12030561 - 12059354
28794