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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_120602094_120605814_F

Intron Information:

Intron Rank:
145429
Intron Class:
major
Intron Phase:
Intron Coordinates:
120602094 - 120605814
Intron Length:
3721

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATCCAT
5'SS Class:
major
3'SS Sequence:
TAATATTTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTCAT
U12 Branch Point Sequence:
TCATCCTTACAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
70.7
41.1
Major BPS
82.6
0.81
0.9
83.3
27.7
Major PPT
79.7
0.67
0.9
73.6
40.9
Minor 5ss
39.6
-1.2
3.1
56.4
47.8
Minor BPS
63.7
0.51
1.8
78.07
43.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028400
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041276
120601608 - 120606051
4444