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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_120604001_120605814_F

Intron Information:

Intron Rank:
145426
Intron Class:
major
Intron Phase:
Intron Coordinates:
120604001 - 120605814
Intron Length:
1814

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGGTTC
5'SS Class:
strong_major
3'SS Sequence:
TAATATTTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTCAT
U12 Branch Point Sequence:
TCATCCTTACAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.3
0.79
0.9
75.6
34.9
Major BPS
82.6
0.81
0.9
83.3
27.7
Major PPT
79.7
0.67
0.9
73.6
40.9
Minor 5ss
47.4
-0.3
3.1
66.9
44.7
Minor BPS
63.7
0.51
1.8
78.07
43.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028400
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024801
120603942 - 120606750
2809
ENSAPLT00000039905
120603395 - 120606051
2657