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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_120812468_120816168_F

Intron Information:

Intron Rank:
139031
Intron Class:
major
Intron Phase:
Intron Coordinates:
120812468 - 120816168
Intron Length:
3701

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTTGTCAT
5'SS Class:
major
3'SS Sequence:
TGTTCCTGCATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATTAAT
U12 Branch Point Sequence:
ACAACATTAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.6
0.6
1.2
71.7
39.5
Major BPS
79.4
0.73
0.9
79.6
29.1
Major PPT
69.5
0.44
0.9
65.1
36.4
Minor 5ss
38.3
-1.3
2.8
50.3
46
Minor BPS
57.4
0.31
1.6
69.48
41.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024851
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048247
120812414 - 120823486
11073