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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_120816330_120823283_F

Intron Information:

Intron Rank:
139032
Intron Class:
major
Intron Phase:
Intron Coordinates:
120816330 - 120823283
Intron Length:
6954

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGGCAT
5'SS Class:
strong_major
3'SS Sequence:
ATTTACCTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTACAT
U12 Branch Point Sequence:
TCTACATTTACC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1
71.3
40.1
Major BPS
70.2
0.5
1.1
77.2
36
Major PPT
80.6
0.69
0.9
70.8
40.1
Minor 5ss
38.5
-1.3
3.4
55.3
48.9
Minor BPS
54
0.11
2
68.98
42.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024851
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048247
120812414 - 120823486
11073