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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_120846331_120848413_R

Intron Information:

Intron Rank:
144540
Intron Class:
major
Intron Phase:
Intron Coordinates:
120846331 - 120848413
Intron Length:
2083

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
GCTTTTTTCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAAAAAT
U12 Branch Point Sequence:
AGTGATAAAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
0.8
85.9
23.8
Major BPS
62.8
0.32
1.1
67.9
34.4
Major PPT
79.3
0.66
0.8
72.8
37.5
Minor 5ss
33.7
-1.9
2.8
42.6
38.4
Minor BPS
38.6
-0.7
2
54.23
40.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025089
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039994
120845620 - 120848984
3365