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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_120954481_120960519_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
120954481 - 120960519
Intron Length:
6039

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAATTTAT
5'SS Class:
major
3'SS Sequence:
TGTTTAATCGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTAAT
U12 Branch Point Sequence:
TTTTGTTTAATC
Flanking Amino Acid:
REQLDNLVYLESALNESLRM
Intron Amino Acid Position:
347

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.1
0.66
1
76.8
34.6
Major BPS
81.8
0.79
1.1
84
34.5
Major PPT
76.6
0.6
0.9
70.9
38.7
Minor 5ss
41.5
-0.9
2.9
50
46.3
Minor BPS
71.7
0.66
1.7
81.67
33.1

Associated Gene:

Gene:
CYP7B1
Ensembl Gene ID:
ENSAPLG00000011556
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012063
120950019 - 121067446
117428