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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_120968295_121067348_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
120968295 - 121067348
Intron Length:
99054

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACCGGGG
5'SS Class:
major
3'SS Sequence:
ATGTTTTTAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
ATGTTTTTAACA
Flanking Amino Acid:
WAVCVLCRRKRKTGEPPLIN
Intron Amino Acid Position:
33

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63.7
0.32
1.3
49.8
46.9
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
77.7
0.62
1
73.8
40
Minor 5ss
33.1
-1.9
3.7
46.9
48.5
Minor BPS
75.1
0.78
1.1
76.87
34.2

Associated Gene:

Gene:
CYP7B1
Ensembl Gene ID:
ENSAPLG00000011556
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012063
120950019 - 121067446
117428