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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_121093215_121141734_F

Intron Information:

Intron Rank:
138174
Intron Class:
major
Intron Phase:
Intron Coordinates:
121093215 - 121141734
Intron Length:
48520

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGATTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTTGAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
GCTAATTTAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.2
1.04
0.7
90.6
21.2
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
77.8
0.63
1.7
92.3
26.6
Minor 5ss
43.9
-0.7
3.2
64.8
46.5
Minor BPS
57.9
0.33
1.5
70.21
41

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024308
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046075
121081719 - 121142380
60662