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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_121125004_121125549_R

Intron Information:

Intron Rank:
130025
Intron Class:
major
Intron Phase:
Intron Coordinates:
121125004 - 121125549
Intron Length:
546

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGCGTTAA
5'SS Class:
major
3'SS Sequence:
CTGCCTCTTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTAGATATAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.2
0.6
1
69.2
33.1
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
78
0.63
0.8
69
37
Minor 5ss
33.1
-1.9
3
36.8
42.9
Minor BPS
51.6
0.13
1.9
74.77
41.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017156
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037799
121123956 - 121126010
2055