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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_121276211_121283448_R

Intron Information:

Intron Rank:
133592
Intron Class:
major
Intron Phase:
Intron Coordinates:
121276211 - 121283448
Intron Length:
7238

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAACT
5'SS Class:
strong_major
3'SS Sequence:
TATTATTATTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TTATTATTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.1
1.02
0.7
87.2
27
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
76.1
0.59
0.9
74.8
39.6
Minor 5ss
36.1
-1.6
3
50.2
45.8
Minor BPS
56.7
0.29
1.8
77.56
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019145
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043886
121275740 - 121284458
8719