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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_121283598_121284335_R

Intron Information:

Intron Rank:
133593
Intron Class:
major
Intron Phase:
Intron Coordinates:
121283598 - 121284335
Intron Length:
738

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAAGTT
5'SS Class:
strong_major
3'SS Sequence:
TGCTATTCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
CCTGCTTTACAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
0.9
81.3
30.4
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
74.6
0.55
0.9
68.4
37.2
Minor 5ss
35.7
-1.6
3.7
55.7
48.5
Minor BPS
48.6
-0
1.9
63.96
46.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019145
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043886
121275740 - 121284458
8719