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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_121344630_121361307_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
121344630 - 121361307
Intron Length:
16678

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTTTA
5'SS Class:
strong_major
3'SS Sequence:
CCTTTTCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTAAT
U12 Branch Point Sequence:
AATTCTTTACAA
Flanking Amino Acid:
MMLSLQNVIQKTTTPGETKL
Intron Amino Acid Position:
110

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.8
86.9
22.7
Major BPS
87
0.92
0.9
86.2
29.1
Major PPT
89.8
0.89
0.6
88
22
Minor 5ss
45.5
-0.5
2.8
58.5
40.4
Minor BPS
58.4
0.26
1.7
68.19
37.9

Associated Gene:

Gene:
ARMC1
Ensembl Gene ID:
ENSAPLG00000013027
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017953
121338926 - 121367839
28914
ENSAPLT00000013576
121300911 - 121365691
64781