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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_121365656_121367483_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
121365656 - 121367483
Intron Length:
1828

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTACGGGGC
5'SS Class:
major
3'SS Sequence:
TTTTCTTCAGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
TTTTCTTCAGCA
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69
0.45
1.1
56.6
42.5
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
84.7
0.78
0.8
82.3
27.9
Minor 5ss
29
-2.4
3.7
40.8
45.9
Minor BPS
64.6
0.46
1.8
79.68
36.6

Associated Gene:

Gene:
ARMC1
Ensembl Gene ID:
ENSAPLG00000013027
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017953
121338926 - 121367839
28914