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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_121369632_121373699_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
121369632 - 121373699
Intron Length:
4068

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGTGTACA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTGTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
TGCTTCTAAAAT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.7
0.82
0.8
78.5
30.2
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
89.5
0.89
0.7
88.2
29.1
Minor 5ss
36.7
-1.5
2.5
43
44
Minor BPS
56.8
0.29
1.8
73.29
43.5

Associated Gene:

Gene:
MTFR1
Ensembl Gene ID:
ENSAPLG00000002927
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002964
121369576 - 121391165
21590