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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_121377235_121379197_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
121377235 - 121379197
Intron Length:
1963

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCATT
5'SS Class:
strong_major
3'SS Sequence:
TCTTTCTTGCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCCTAT
U12 Branch Point Sequence:
TTTCCTATAGCT
Flanking Amino Acid:
LIQCPRVQFQL*
Intron Amino Acid Position:
114

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.2
1.02
0.8
90.9
28.7
Major BPS
68.8
0.47
1.3
66.7
41.7
Major PPT
81.8
0.71
0.9
76.7
37.4
Minor 5ss
45.3
-0.5
2.9
66
45.2
Minor BPS
58.4
0.34
1.9
82.67
38.3

Associated Gene:

Gene:
MTFR1
Ensembl Gene ID:
ENSAPLG00000002927
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033742
121369058 - 121379203
10146