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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_121408051_121420218_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
121408051 - 121420218
Intron Length:
12168

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTAAGTATT
5'SS Class:
major
3'SS Sequence:
TTTTTTTTTATAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTTTTTTTATA
Flanking Amino Acid:
HPYIDFRIFHSNSEIEVSVS
Intron Amino Acid Position:
95

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1.1
84.2
33.6
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
94.7
1.01
0.5
91.9
19.2
Minor 5ss
44.6
-0.6
2.9
70.4
39.5
Minor BPS
66.5
0.51
1.5
77.98
32.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022620
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046774
121407507 - 121465738
58232