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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_121427865_121465600_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
121427865 - 121465600
Intron Length:
37736

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGAGAG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTAAC
U12 Branch Point Sequence:
CATGCATGAAAT
Flanking Amino Acid:
GCPNPRQLSQRRGAISYDSS
Intron Amino Acid Position:
47

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
1
66
40.1
Major BPS
74.5
0.61
1.1
75.6
36.6
Major PPT
100
1.12
0.4
100
0
Minor 5ss
28.4
-2.5
3.5
37
47.6
Minor BPS
47
-0.1
1.9
64.84
44.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022620
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046774
121407507 - 121465738
58232