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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_121487596_121488125_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
121487596 - 121488125
Intron Length:
530

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTGTCTAAA
5'SS Class:
weak_major
3'SS Sequence:
AGTTACCAACCAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTATCAT
U12 Branch Point Sequence:
TTATCATTAAGT
Flanking Amino Acid:
SYRYVRCDLQFKSMVNRGVC
Intron Amino Acid Position:
44

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
59.9
0.23
1.2
64.9
36.2
Major BPS
88.2
0.95
0.9
88.3
28.5
Major PPT
58.7
0.2
1.1
49.6
43.3
Minor 5ss
43.7
-0.7
2.6
54.3
43.5
Minor BPS
67.6
0.63
1.9
86.33
39.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000031190
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038333
121487466 - 121488289
824