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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_121514710_121519963_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
121514710 - 121519963
Intron Length:
5254

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGTGTATT
5'SS Class:
strong_major
3'SS Sequence:
CTCCCCGATTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
GGATTCTTAAAA
Flanking Amino Acid:
EEQIKNDMERDGETPIVLQP
Intron Amino Acid Position:
208

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.6
0.89
0.8
88.7
25.2
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
64.5
0.33
0.9
61.9
33.8
Minor 5ss
42.3
-0.8
2.8
59.2
45.4
Minor BPS
64.6
0.46
1.4
67.23
38.3

Associated Gene:

Gene:
DNAJC5B
Ensembl Gene ID:
ENSAPLG00000013934
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014518
121506068 - 121520058
13991