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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_12151637_12168775_F

Intron Information:

Intron Rank:
126734
Intron Class:
major
Intron Phase:
Intron Coordinates:
12151637 - 12168775
Intron Length:
17139

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGCAAC
5'SS Class:
major
3'SS Sequence:
GGTTACTTTCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
TACTGTTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.5
0.67
0.9
70.2
35.9
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
76.2
0.59
1
65.9
45
Minor 5ss
34.4
-1.8
2.9
39.8
40.4
Minor BPS
49.4
0.03
2
68.17
43.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018285
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027422
12151445 - 12169153
17709