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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_121526465_121526803_F

Intron Information:

Intron Rank:
139029
Intron Class:
major
Intron Phase:
Intron Coordinates:
121526465 - 121526803
Intron Length:
339

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATCCCC
5'SS Class:
major
3'SS Sequence:
TTTTTCATTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTCCTTCATG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.8
0.63
1.1
62.6
42.2
Major BPS
100
1.24
0.5
100
0
Major PPT
90.4
0.91
0.7
85.2
28
Minor 5ss
39.2
-1.2
3
52.3
44.4
Minor BPS
72.6
0.57
1.8
79.08
38

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024847
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046761
121526337 - 121531735
5399