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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_121527013_121531000_F

Intron Information:

Intron Rank:
139030
Intron Class:
major
Intron Phase:
Intron Coordinates:
121527013 - 121531000
Intron Length:
3988

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
TCATTTCCTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTCAT
U12 Branch Point Sequence:
AGTTTGGTAATC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.9
1.01
0.7
86
23.7
Major BPS
82.2
0.8
1.1
85.7
34.9
Major PPT
78.5
0.64
0.8
74.1
30.8
Minor 5ss
32.8
-2
2.9
39.7
45.8
Minor BPS
44.9
-0.4
2.5
60.5
39.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024847
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046761
121526337 - 121531735
5399