Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_121531246_121534885_F

Intron Information:

Intron Rank:

139028

Intron Class:

major

Intron Phase:

Intron Coordinates:

121531246 - 121534885

Intron Length:

3640

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TAG|GTGAGAGGT

5'SS Class:

strong_major

3'SS Sequence:

CTTTGAATTACAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTAAAA

U12 Branch Point Sequence:

ATAACTTTAAAA

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.5

0.86

0.8

35.2

Major BPS

73.1

0.58

79.6

29.1

Major PPT

77.5

0.62

0.9

69.9

39.4

Minor 5ss

26.7

-2.7

3.3

38.5

46.6

Minor BPS

63.7

0.43

1.4

69.07

36.5

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000024847

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000026604

121531206 - 121535114

3909