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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_121540342_121541020_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
121540342 - 121541020
Intron Length:
679

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTTCA
5'SS Class:
strong_major
3'SS Sequence:
TTGGCAAGAACAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TACTCAC
U12 Branch Point Sequence:
CCTTACTCACCT
Flanking Amino Acid:
CRKCASDIFQASNPYLPTRG
Intron Amino Acid Position:
64

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.4
0.86
0.9
77.7
33.5
Major BPS
77.2
0.68
0.8
77.6
26.2
Major PPT
54.5
0.1
1.1
48.5
43
Minor 5ss
39.1
-1.2
3
50.2
46.2
Minor BPS
48.6
-0
2
68.84
47.6

Associated Gene:

Gene:
TRIM55
Ensembl Gene ID:
ENSAPLG00000013946
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018294
121539269 - 121580149
40881
ENSAPLT00000014544
121539269 - 121578390
39122
ENSAPLT00000046028
121539269 - 121580149
40881