About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_121549394_121550914_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
121549394 - 121550914
Intron Length:
1521

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATATT
5'SS Class:
strong_major
3'SS Sequence:
CTTTCCTGACCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTCAC
U12 Branch Point Sequence:
CTTTCCTGACCA
Flanking Amino Acid:
PLTNVYQRQKSELSDGIAVL
Intron Amino Acid Position:
177

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.96
0.8
93.3
21.1
Major BPS
77.7
0.69
1
81
30.2
Major PPT
72.3
0.5
1
66.4
39.5
Minor 5ss
41
-1
3
59.7
44.8
Minor BPS
63.8
0.43
1.8
76.11
41.2

Associated Gene:

Gene:
TRIM55
Ensembl Gene ID:
ENSAPLG00000013946
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018294
121539269 - 121580149
40881
ENSAPLT00000014544
121539269 - 121578390
39122
ENSAPLT00000046028
121539269 - 121580149
40881