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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_121555152_121556157_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
121555152 - 121556157
Intron Length:
1006

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACAAAGT
5'SS Class:
major
3'SS Sequence:
TTTGTTTTCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAG
U12 Branch Point Sequence:
TTTGTTTTCACA
Flanking Amino Acid:
EEPEMAVFLQNAKTLLQKIT
Intron Amino Acid Position:
287

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.2
0.55
1.1
69
41.8
Major BPS
66.8
0.42
1.5
75.7
36.5
Major PPT
87.8
0.85
0.7
83.5
31.6
Minor 5ss
33.5
-1.9
3.3
49.6
46.3
Minor BPS
58.6
0.26
1.8
73.92
38.7

Associated Gene:

Gene:
TRIM55
Ensembl Gene ID:
ENSAPLG00000013946
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046028
121539269 - 121580149
40881
ENSAPLT00000018294
121539269 - 121580149
40881
ENSAPLT00000014544
121539269 - 121578390
39122