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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_121556181_121556273_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
121556181 - 121556273
Intron Length:
93

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
CTCTCTGTTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTTAT
U12 Branch Point Sequence:
TTATCTGCAAAT
Flanking Amino Acid:
FLQNAKTLLQKITEASKGFQ
Intron Amino Acid Position:
294

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.8
93.7
19.8
Major BPS
79.9
0.74
0.9
69.7
37.1
Major PPT
78
0.63
0.8
76.4
32.2
Minor 5ss
43.4
-0.7
2.9
60.8
37.6
Minor BPS
48.4
-0
2.2
74.39
42.2

Associated Gene:

Gene:
TRIM55
Ensembl Gene ID:
ENSAPLG00000013946
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014544
121539269 - 121578390
39122
ENSAPLT00000046028
121539269 - 121580149
40881
ENSAPLT00000018294
121539269 - 121580149
40881