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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_121581410_121582261_R

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
121581410 - 121582261
Intron Length:
852

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGCAAC
5'SS Class:
major
3'SS Sequence:
CGGCTCTGATTAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TATAAAA
U12 Branch Point Sequence:
TAAGCTATAAAA
Flanking Amino Acid:
QCHLLKTGPDGPNLIPSSPR
Intron Amino Acid Position:
52

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77
0.64
1
68.8
38
Major BPS
65.3
0.38
1
71.6
30.1
Major PPT
55.9
0.13
1
55
40.1
Minor 5ss
34.7
-1.7
2.9
43.8
43.8
Minor BPS
48.5
-0.1
1.8
59.8
39.5

Associated Gene:

Gene:
CRH
Ensembl Gene ID:
ENSAPLG00000020533
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028309
121580344 - 121596326
15983