Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_121582431_121596024_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

5UTR

Intron Coordinates:

121582431 - 121596024

Intron Length:

13594

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTACGTGCA

5'SS Class:

strong_major

3'SS Sequence:

TTCCGATGTAAAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TTTTCAG

U12 Branch Point Sequence:

ATTTTCCGATGT

Flanking Amino Acid:

5UTR

Intron Amino Acid Position:

5UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.9

0.85

0.9

75.2

34.9

Major BPS

0.65

1.5

85.7

34.9

Major PPT

59.6

0.22

1.2

59.2

40.1

Minor 5ss

31.9

-2.1

3.3

41.7

44.9

Minor BPS

43.6

-0.4

2.2

67.59

Associated Gene:

Gene:

CRH

Ensembl Gene ID:

ENSAPLG00000020533

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000028309

121580344 - 121596326

15983