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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_12162757_12168775_F

Intron Information:

Intron Rank:
126736
Intron Class:
major
Intron Phase:
Intron Coordinates:
12162757 - 12168775
Intron Length:
6019

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGAATC
5'SS Class:
strong_major
3'SS Sequence:
GGTTACTTTCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
TACTGTTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.4
0.79
0.9
81.8
29.7
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
76.2
0.59
1
65.9
45
Minor 5ss
39.7
-1.1
3.1
53.3
37.6
Minor BPS
49.4
0.03
2
68.17
43.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018285
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042942
12151445 - 12169153
17709