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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_121665826_121665981_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
121665826 - 121665981
Intron Length:
156

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACTACTT
5'SS Class:
major
3'SS Sequence:
CCTGTTTTCCAAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGAAAA
U12 Branch Point Sequence:
TTTCTCCTGAGT
Flanking Amino Acid:
DEVRVEPTDQSFLDAIEFAK
Intron Amino Acid Position:
142

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.3
0.53
1.1
68.5
42.3
Major BPS
58
0.2
1.2
65.3
38.6
Major PPT
68.1
0.41
1
66.5
38.6
Minor 5ss
36.9
-1.5
3.5
57.2
46.9
Minor BPS
50.6
0.1
2
77.12
39.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014301
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042768
121659665 - 121678714
19050
ENSAPLT00000028717
121657205 - 121678714
21510
ENSAPLT00000017416
121657205 - 121678714
21510
ENSAPLT00000014927
121660496 - 121679499
19004