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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_121666179_121666536_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
121666179 - 121666536
Intron Length:
358

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGCAG
5'SS Class:
major
3'SS Sequence:
TCTTCTTTTTAAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TTGTTATTATCC
Flanking Amino Acid:
VTVPLKPHIAVPTTAGTGSE
Intron Amino Acid Position:
208

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.9
0.66
1
62.9
43.2
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
81.4
0.71
0.9
86.5
24.9
Minor 5ss
29.5
-2.4
3.3
37.6
47.1
Minor BPS
56.6
0.19
1.9
70.95
40.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014301
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014927
121660496 - 121679499
19004
ENSAPLT00000042768
121659665 - 121678714
19050
ENSAPLT00000028717
121657205 - 121678714
21510
ENSAPLT00000027446
121657205 - 121678714
21510
ENSAPLT00000017416
121657205 - 121678714
21510