About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_121666615_121667757_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
121666615 - 121667757
Intron Length:
1143

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGATTT
5'SS Class:
strong_major
3'SS Sequence:
CCATATTTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAA
U12 Branch Point Sequence:
CTTCCCATATTT
Flanking Amino Acid:
FDFKELKVKTGIASRAIKPT
Intron Amino Acid Position:
234

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
0.9
79.4
29.5
Major BPS
73.8
0.59
0.9
74
26.8
Major PPT
78.5
0.64
0.9
72.4
37.1
Minor 5ss
38.6
-1.3
3.3
53.2
45
Minor BPS
52.2
0.15
1.9
74.34
42.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014301
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014927
121660496 - 121679499
19004
ENSAPLT00000042768
121659665 - 121678714
19050
ENSAPLT00000028717
121657205 - 121678714
21510
ENSAPLT00000027446
121657205 - 121678714
21510
ENSAPLT00000017416
121657205 - 121678714
21510