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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_121667864_121669107_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
121667864 - 121669107
Intron Length:
1244

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
ATCTTTCTTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TCCCACTTAAAT
Flanking Amino Acid:
IVANSGFDVLCHALESYTAL
Intron Amino Acid Position:
269

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.8
85.7
25.5
Major BPS
100
1.24
0.5
100
0
Major PPT
83
0.74
0.7
81.7
29.6
Minor 5ss
40.8
-1
3
55
43.6
Minor BPS
58
0.33
1.7
71.82
44.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014301
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027446
121657205 - 121678714
21510
ENSAPLT00000017416
121657205 - 121678714
21510
ENSAPLT00000014927
121660496 - 121679499
19004
ENSAPLT00000042768
121659665 - 121678714
19050
ENSAPLT00000028717
121657205 - 121678714
21510