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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_121669261_121670346_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
121669261 - 121670346
Intron Length:
1086

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATACCT
5'SS Class:
strong_major
3'SS Sequence:
CCATGGCGTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTCCAT
U12 Branch Point Sequence:
TTTGCTGGTACC
Flanking Amino Acid:
ALRIVAKYLKRAIRNPEDRE
Intron Amino Acid Position:
320

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
1
71
39
Major BPS
64.7
0.37
1.3
74.7
40
Major PPT
61.1
0.25
1.1
53.4
41.3
Minor 5ss
34.7
-1.7
3.2
49.7
46.1
Minor BPS
43.2
-0.5
2.4
62.8
43.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014301
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042768
121659665 - 121678714
19050
ENSAPLT00000028717
121657205 - 121678714
21510
ENSAPLT00000027446
121657205 - 121678714
21510
ENSAPLT00000014927
121660496 - 121679499
19004