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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_121671472_121671617_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
121671472 - 121671617
Intron Length:
146

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAAATTT
5'SS Class:
major
3'SS Sequence:
TGTTTTTTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTTT
U12 Branch Point Sequence:
GTTTTTTTGTTT
Flanking Amino Acid:
KDYNVDHSLVPHGLSVVLTS
Intron Amino Acid Position:
380

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77
0.64
1
76.6
32.7
Major BPS
38.1
-0.7
4.3
71.7
44.6
Major PPT
91.6
0.94
0.7
84.6
36
Minor 5ss
43.4
-0.7
3.3
61.7
44.2
Minor BPS
44.5
-0.3
3.4
74.33
37.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014301
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027446
121657205 - 121678714
21510
ENSAPLT00000017416
121657205 - 121678714
21510
ENSAPLT00000014927
121660496 - 121679499
19004
ENSAPLT00000042768
121659665 - 121678714
19050
ENSAPLT00000028717
121657205 - 121678714
21510