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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_121671715_121674836_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
121671715 - 121674836
Intron Length:
3122

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAGGAATC
5'SS Class:
strong_major
3'SS Sequence:
TGTCTTATTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTCTTAT
U12 Branch Point Sequence:
TATGTCTTATTT
Flanking Amino Acid:
ERHLEAAEILGADIRTARIK
Intron Amino Acid Position:
412

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
1
79
35.3
Major BPS
73.7
0.59
1.2
65.7
43.2
Major PPT
80
0.67
0.8
78.3
34.8
Minor 5ss
36.6
-1.5
3.3
51.4
45.5
Minor BPS
60.1
0.4
1.7
76.26
41

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014301
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014927
121660496 - 121679499
19004
ENSAPLT00000042768
121659665 - 121678714
19050
ENSAPLT00000028717
121657205 - 121678714
21510
ENSAPLT00000027446
121657205 - 121678714
21510
ENSAPLT00000017416
121657205 - 121678714
21510