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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_121678715_121679297_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
3UTR
Intron Coordinates:
121678715 - 121679297
Intron Length:
583

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATTTCT
5'SS Class:
strong_major
3'SS Sequence:
CTTTCCTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
TTTTCCAATACT
Flanking Amino Acid:
3UTR
Intron Amino Acid Position:
3UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.9
83.3
29
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
88.5
0.87
0.7
80.6
31.4
Minor 5ss
42.9
-0.8
2.8
60
44.3
Minor BPS
55.4
0.25
2.3
85.44
40.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014301
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014927
121660496 - 121679499
19004