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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_121691447_121695444_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
121691447 - 121695444
Intron Length:
3998

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTGAGTACA
5'SS Class:
strong_major
3'SS Sequence:
GTTCTTTTCACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCCTGAC
U12 Branch Point Sequence:
GTTCTTTTCACA
Flanking Amino Acid:
EVFTTVISSKSCSPARRRAK
Intron Amino Acid Position:
23

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
1
78.8
29.6
Major BPS
56.5
0.16
1.1
48.6
36.6
Major PPT
84.4
0.77
0.8
79.4
32.6
Minor 5ss
33
-1.9
2.7
39.4
38.9
Minor BPS
55.9
0.18
1.7
68.82
37.6

Associated Gene:

Gene:
VXN
Ensembl Gene ID:
ENSAPLG00000020243
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022876
121691380 - 121711221
19842