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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_121695501_121700513_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
121695501 - 121700513
Intron Length:
5013

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGT|GTAAGAAAA
5'SS Class:
major
3'SS Sequence:
CTCTTCCCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTAAC
U12 Branch Point Sequence:
CTGGCTCTAACA
Flanking Amino Acid:
KSTQHFLTKSVIAVSDCQPH
Intron Amino Acid Position:
42

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.3
0.5
1.1
69.9
36.1
Major BPS
72.3
0.55
1
73.3
28.9
Major PPT
82.8
0.74
0.7
77.1
24.9
Minor 5ss
34.8
-1.7
3
41.3
44.8
Minor BPS
52.1
0.06
1.8
63.23
43.6

Associated Gene:

Gene:
VXN
Ensembl Gene ID:
ENSAPLG00000020243
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022876
121691380 - 121711221
19842