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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_121700641_121706965_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
121700641 - 121706965
Intron Length:
6325

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGTCCT
5'SS Class:
strong_major
3'SS Sequence:
TTATACTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TGTTTCTTATAC
Flanking Amino Acid:
GQQGPCTTMHVGITERESSK
Intron Amino Acid Position:
84

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86
0.85
0.9
75.7
40.1
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
83.2
0.75
0.9
77.5
36.2
Minor 5ss
37.3
-1.4
3
52.6
43.7
Minor BPS
61.4
0.34
1.7
72.14
38.7

Associated Gene:

Gene:
VXN
Ensembl Gene ID:
ENSAPLG00000020243
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022876
121691380 - 121711221
19842