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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_121708413_121709063_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
121708413 - 121709063
Intron Length:
651

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGA|GTGAGTCCC
5'SS Class:
major
3'SS Sequence:
CTTTATTTGCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCTTTAT
U12 Branch Point Sequence:
TGTGCTTTATTT
Flanking Amino Acid:
SPMDDHPLADDHRQRLRKMA
Intron Amino Acid Position:
134

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.7
0.47
1.1
59.5
39.8
Major BPS
66.1
0.4
1.3
59.6
46.8
Major PPT
78.5
0.64
1
72.8
41.9
Minor 5ss
31.3
-2.1
2.8
33.6
34.8
Minor BPS
59.8
0.39
1.7
76.04
41.4

Associated Gene:

Gene:
VXN
Ensembl Gene ID:
ENSAPLG00000020243
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022876
121691380 - 121711221
19842