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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_121816038_121817926_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
121816038 - 121817926
Intron Length:
1889

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGCAAA
5'SS Class:
strong_major
3'SS Sequence:
TCTTTATTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
ACATCTTTATTT
Flanking Amino Acid:
YAEFDKLYNTLKKQFPTMNL
Intron Amino Acid Position:
55

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
1
74.5
37.6
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
90.5
0.91
0.7
88.8
26.9
Minor 5ss
39.2
-1.2
2.9
49.4
46.6
Minor BPS
59.7
0.38
1.6
70.65
41

Associated Gene:

Gene:
SGK3
Ensembl Gene ID:
ENSAPLG00000015056
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015789
121811608 - 121842956
31349