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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_121818000_121820736_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
121818000 - 121820736
Intron Length:
2737

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTAAGTTAT
5'SS Class:
strong_major
3'SS Sequence:
ATCTTTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TCATTCCTAATA
Flanking Amino Acid:
KRIFGDNFDPDFIKQRRAGL
Intron Amino Acid Position:
79

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.8
0.91
0.9
84.4
29.2
Major BPS
100
1.24
0.5
100
0
Major PPT
89.8
0.9
0.7
88.4
28
Minor 5ss
42.3
-0.8
2.9
59
45.5
Minor BPS
59.8
0.3
1.7
68.29
38.4

Associated Gene:

Gene:
SGK3
Ensembl Gene ID:
ENSAPLG00000015056
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015789
121811608 - 121842956
31349