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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_121820813_121827150_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
121820813 - 121827150
Intron Length:
6338

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTAAGTAGT
5'SS Class:
major
3'SS Sequence:
ATTGTGCTTCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTCAT
U12 Branch Point Sequence:
GGTGTCCTAATG
Flanking Amino Acid:
NLVRQPELCNHPDVRAFLQM
Intron Amino Acid Position:
104

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.66
1
75.9
39.9
Major BPS
86.1
0.9
0.7
85.7
22.9
Major PPT
72.4
0.5
0.9
63
43.6
Minor 5ss
39.6
-1.2
2.9
57.1
41.1
Minor BPS
48
-0.2
1.8
53.06
42

Associated Gene:

Gene:
SGK3
Ensembl Gene ID:
ENSAPLG00000015056
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015789
121811608 - 121842956
31349